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BioSoftwares

Bioinformatics Tools – Solutions – Services

Archive for the ‘Text mining’ Category

NoteExpress – scientific information manager

Posted by primoto On September - 11 - 2009

NoteExpressNoteExpress is a perfect assistant and information manager for researchers, scholars, students, and librarians. NoteExpress is designed to help you organize research notes and bibliographic references, generate bibliographies automatically, search and capture bibliographic data from Internet with efficiency and ease. NoteExpress is well integrated with Microsoft Word. It can format bibliographies in many popular styles. NoteExpress works the same as many other bibliograhic softwares but with many additional efficient features like:

  • Manage bibliographic data and notes with efficiency
  • Organize academic papers and any other files in disk together with bibliographic data and note
  • Capture data from many Internet sources
  • Multilingual style formatting supported
  • Efficiency and robust
  • Bibilographic records and notes can be categorized in different folders. What’s more, they can be multi-categorized without being duplicated.
  • NoteExpress supports many internet libraries and can import bibliographic data without tedious typing. NoteExpress imports data via Z39.50 protocol which is commonly used by most of the public libraries. With NoteExpress, users can search and import bibliography from National Library of Congress, OCLC, etc. NoteExpress also supports searches in Amazon, Jstor, Web of Science library.
  • NoteExpres imports bibliographic data with dramatic speed (0.5 milliseconds for 10000 records at a Pentium IV 1.8G, 256M computer, more than 10 times faster than any other bibliographic tools!).
  • NoteExpress is well integrated into Microsoft Word. User can cite and write without leaving Word environment. There are more than 1350 journal styles included, and is increasing.
  • NoteExpress helps you mangage your academic files in your hard disk. With NoteExpress’s attachment management module, users can add as many documents into NoteExpress library. That is, NoteExpress is not only a bibliographic manager, it’s also a scholar’s assitant.

OS: Win9x/Me/NT/2000/XP/2003

Licence: Free

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NoteExpress is a perfect assistant and information manager for researchers, scholars, students, and librarians. NoteExpress is designed to help you organize research notes and bibliographic references, generate bibliographies automatically, search and capture bibliographic data from Internet with efficiency and ease. NoteExpress is well integrated with Microsoft Word. It can format bibliographies in many popular styles. NoteExpress works the same as many other bibliograhic softwares but with many additional efficient features like…

Manage bibliographic data and notes with efficiency
Organize academic papers and any other files in disk together with bibliographic data and note
Capture data from many Internet sources
Multilingual style formatting supported
Efficiency and robust
Bibilographic records and notes can be categorized in different folders. What’s more, they can be multi-categorized without being duplicated.
NoteExpress supports many internet libraries and can import bibliographic data without tedious typing. NoteExpress imports data via Z39.50 protocol which is commonly used by most of the public libraries. With NoteExpress, users can search and import bibliography from National Library of Congress, OCLC, etc. NoteExpress also supports searches in Amazon, Jstor, Web of Science library.
NoteExpres imports bibliographic data with dramatic speed (0.5 milliseconds for 10000 records at a Pentium IV 1.8G, 256M computer, more than 10 times faster than any other bibliographic tools!).
NoteExpress is well integrated into Microsoft Word. User can cite and write without leaving Word environment. There are more than 1350 journal styles included, and is increasing.
NoteExpress helps you mangage your academic files in your hard disk. With NoteExpress’s attachment management module, users can add as many documents into NoteExpress library. That is, NoteExpress is not only a bibliographic manager, it’s also a scholar’s assitant.

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Ondex – data integration platform

Posted by primoto On September - 3 - 2009

ondexGathering and managing data from diverse and heterogeneous datasets is central to many systems approaches to biology. Systems biologists need to easily identify and gather the information they require and then integrate and analysis the experimental and reference data sets which can come from myriad databases with a wide variety of formats and access methods.

The Ondex data integration platform enables data from diverse biological data sets to be linked, integrated and visualised through graph analysis techniques. Ondex uses a rich and flexible core data structure, which has the ability to bring together information from structured databases and unstructured sources such as biological sequence data and free text. Ondex also offers a front-end, which allows users to visualise and analyse the integrated data.

Technology

  • Java J2SE 6.0
  • Oracle Berkeley DB Java Edition
  • Apache CXF SOAP framework
  • Apache Lucene text search engine

Features

  • Import databases and experimental datasets
  • Merge them
  • Export as an Ondex graph
  • Export as a tab-delimited file
  • Import an Ondex graph or use the front-end to compose a workflow and run your data integration
  • Visualise the integrated data
  • Use available filters and annotators to analyse the data
  • Export annotated graphs as images

OS: Linux, Unix and Windows

Licence: Open Source under GNU GPL

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About Us

BioSoftwares is entirely dedicated on providing the latest information related to bioinformatics tools, solutions and services. BioSoftwares hosts an up-to-date software database, containing the latest versions of freely available applications and complete solutions for sequence analysis and annotation, gene expression clustering, advanced biological information retrieval and text mining. BioSoftwares evaluates the best available solutions in field of interest with in depth reviews of the applications functionalities and performance. Stay tuned to BioSoftwares for the latest news and trends in the field of applied bioinformatics!